view tool_dependencies.xml @ 1:49de32b47548 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573

<?xml version="1.0"?>
<tool_dependency>
    <package name="zlib" version="1.2.8">
        <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="gemini" version="0.18.1">
        <install version="1.0">
            <actions>
                <!-- first action is always downloading -->
                <action sha256sum="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68" type="download_by_url">https://github.com/arq5x/gemini/archive/v0.18.1.tar.gz</action>

                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">
                    <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="zlib" version="1.2.8" />
                    </repository>
                </action>

                <action type="shell_command">
                    sed -i.bak -e 's/^gemini=0.18.1=py27_7/gemini=0.18.1=py27_2/g' ./versioning/0.18.1/requirements_conda.txt
                </action>

                <action type="shell_command">
                    export HOME=$INSTALL_DIR &amp;&amp; python ./gemini/scripts/gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.1
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
                    <environment_variable action="set_to" name="HOME">.</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling GEMINI requires a recent c++ compiler, usually gcc.</readme>
    </package>
</tool_dependency>