Mercurial > repos > iuc > package_genometools_1_5_7
annotate tool_dependencies.xml @ 0:6c1cc41af15b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
author | iuc |
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date | Tue, 26 Jan 2016 15:01:23 -0500 |
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6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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1 <?xml version="1.0"?> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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2 <tool_dependency> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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3 <package name="genometools" version="1.5.7"> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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4 <install version="1.0"> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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5 <actions> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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6 <action type="download_by_url" sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5"> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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7 https://depot.galaxyproject.org/software/genometools/genometools_1.5.7_src_all.tar.gz |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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8 </action> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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9 <action type="shell_command">make 64bit=yes cairo=no prefix=$INSTALL_DIR install</action> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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10 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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11 <action type="shell_command">cd gtpython && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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12 <action type="set_environment"> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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13 <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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14 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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17 </action> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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18 </actions> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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19 </install> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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20 <readme> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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21 The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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22 It is based on a C library named “libgenometools” which consists of several modules. |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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23 |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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24 For more details, see: |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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25 http://genometools.org/ |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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26 </readme> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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27 </package> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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28 </tool_dependency> |
6c1cc41af15b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
iuc
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29 |