Mercurial > repos > iuc > package_genometools_1_5_7
changeset 0:6c1cc41af15b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a
| author | iuc |
|---|---|
| date | Tue, 26 Jan 2016 15:01:23 -0500 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 29 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jan 26 15:01:23 2016 -0500 @@ -0,0 +1,29 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="genometools" version="1.5.7"> + <install version="1.0"> + <actions> + <action type="download_by_url" sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5"> + https://depot.galaxyproject.org/software/genometools/genometools_1.5.7_src_all.tar.gz + </action> + <action type="shell_command">make 64bit=yes cairo=no prefix=$INSTALL_DIR install</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command">cd gtpython && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> + <action type="set_environment"> + <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. +It is based on a C library named “libgenometools” which consists of several modules. + +For more details, see: +http://genometools.org/ + </readme> + </package> +</tool_dependency> +