Mercurial > repos > iuc > package_gfserver_35x1

changeset 0:a36792c6785b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:58:35 -0400
parents
children 200016667639
files tool_dependencies.xml
diffstat 1 files changed, 31 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 19 14:58:35 2015 -0400
@@ -0,0 +1,31 @@
+<tool_dependency>
+    <package name="gfServer" version="35x1">
+        <install version="1.0">
+            <actions>
+                <action type="download_binary">
+                    <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/gfServer_35x1</url_template>
+                    <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/gfServer_35x1</url_template>
+                    <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/gfServer_35x1</url_template>
+                    <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/gfServer_35x1</url_template>
+                </action>
+
+                <action type="move_file">
+                    <source>gfServer_35x1</source>
+                    <destination>$INSTALL_DIR/bin/gfServer</destination>
+                </action>
+                <action type="chmod">
+                    <file mode="755">$INSTALL_DIR/bin/gfServer</file>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="append_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="GFSERVER_ROOT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
+                </action>
+
+            </actions>
+        </install>
+        <readme>
+gfServer: a server that maintains an index of the genome in memory and uses the index to quickly find regions with high levels of sequence similarity to a query sequence.
+http://genome.ucsc.edu/goldenPath/help/blatSpec.html
+        </readme>
+    </package>
+</tool_dependency>