Mercurial > repos > iuc > package_jellyfish_1_1_11
annotate tool_dependencies.xml @ 0:ccc747644181 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author | iuc |
---|---|
date | Tue, 19 May 2015 14:58:58 -0400 |
parents | |
children |
rev | line source |
---|---|
0
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
2 <tool_dependency> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
3 <package name="jellyfish" version="1.1.11"> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
4 <install version="1.0"> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
5 <actions> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
6 <action type="download_by_url">http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz</action> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
7 <action type="autoconf"/> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
8 <action type="set_environment"> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
9 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
10 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
11 <environment_variable name="JELLYFISH_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
12 </action> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
13 </actions> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
14 </install> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
15 <readme> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
16 <![CDATA[ |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
17 JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
18 ]]> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
19 </readme> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
20 </package> |
ccc747644181
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
parents:
diff
changeset
|
21 </tool_dependency> |