Mercurial > repos > iuc > package_jellyfish_1_1_11
changeset 0:ccc747644181 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
| author | iuc |
|---|---|
| date | Tue, 19 May 2015 14:58:58 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 21 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 19 14:58:58 2015 -0400 @@ -0,0 +1,21 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="jellyfish" version="1.1.11"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz</action> + <action type="autoconf"/> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> + <environment_variable name="JELLYFISH_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> +<![CDATA[ +JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. +]]> + </readme> + </package> +</tool_dependency>