Mercurial > repos > iuc > package_jellyfish_1_1_11

view tool_dependencies.xml @ 0:ccc747644181 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:58:58 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="jellyfish" version="1.1.11">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz</action>
                <action type="autoconf"/>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable name="JELLYFISH_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
<![CDATA[
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
]]>
        </readme>
    </package>
</tool_dependency>