Mercurial > repos > iuc > package_krona_2_5
changeset 0:96d808a49774 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
author | iuc |
---|---|
date | Fri, 31 Jul 2015 15:37:43 -0400 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 48 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jul 31 15:37:43 2015 -0400 @@ -0,0 +1,48 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="krona" version="2.5"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://depot.galaxyproject.org/package/source/KronaTools-2.5.tar</action> + <action type="set_environment_for_install"> + <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + </action> + <action type="move_directory_files"> + <source_directory>lib</source_directory> + <destination_directory>$INSTALL_DIR/lib</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>scripts</source_directory> + <destination_directory>$INSTALL_DIR/scripts</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>img</source_directory> + <destination_directory>$INSTALL_DIR/img</destination_directory> + </action> + <action type="move_directory_files"> + <source_directory>src</source_directory> + <destination_directory>$INSTALL_DIR/src</destination_directory> + </action> + <action type="make_directory">$INSTALL_DIR/bin</action> + <action type="shell_command"> + for i in ClassifyBLAST GetContigMagnitudes GetLibPath GetTaxIDFromGI \ + ImportBLAST ImportDiskUsage ImportEC ImportFCP ImportGalaxy \ + ImportMETAREP-BLAST ImportMETAREP-EC ImportMGRAST ImportPhymmBL \ + ImportRDP ImportRDPComparison ImportTaxonomy ImportText ImportXML ; do + ln -s $INSTALL_DIR/scripts/$i.pl $INSTALL_DIR/bin/kt$i + done + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> + </action> + </actions> + </install> + <readme /> + </package> +</tool_dependency>