annotate tool_dependencies.xml @ 0:b38bd896aae0 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_labels_1_0_5 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09

<?xml version="1.0"?>
<tool_dependency>
    <package name="pysam" version="0.7.7">
        <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="labels" version="1.0.5">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://pypi.python.org/packages/source/l/lapels/lapels-1.0.5.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="pysam" version="0.7.7" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                </action>
                <action type="set_environment">
                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYSAM_PATH]/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$ENV[PYSAM_PATH]</environment_variable>
                    <environment_variable action="set_to" name="PYTHONPATH_LABELS">$INSTALL_DIR/lib/python</environment_variable>
                    </action>
            </actions>
        </install>
        <readme>The PYTHONPATH for labels can be accessed through PYTHONPATH_LABELS.</readme>
    </package>
</tool_dependency>