Mercurial > repos > iuc > package_mlst_2_6

changeset 0:53b0a618e1a7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_mlst_2_6 commit 659da38ca2b6ce2a699a263bdf6f513775e3ac21-dirty
author iuc
date Mon, 12 Dec 2016 15:07:27 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 51 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Dec 12 15:07:27 2016 -0500
@@ -0,0 +1,51 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="blast+" version="2.2.31">
+        <repository changeset_revision="921d2963a177" name="package_blast_plus_2_2_31" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="mlst" version="2.6">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="711bff24ce0873ab911cd43a17be3b805dd7bde7918f96401ce40e423f8de836" type="download_by_url">https://github.com/tseemann/mlst/archive/v2.6.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/bin/mlst</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                <action type="setup_perl_environment">
+                    <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+
+                    <!-- List::MoreUtils -->
+                    <package sha256sum="8f1622c5ebbfbcd519ead81df7917e48cb16cc527b1c46737b0459c3908a023f">
+                        https://depot.galaxyproject.org/software/Exporter-Tiny/Exporter-Tiny_0.042_src_all.tar.gz
+                    </package>
+                    <package sha256sum="66d31289647761e772fa26baa14e513e34c4186af7e5ee8a1bc13c79d1ee15b3">
+                        https://depot.galaxyproject.org/software/List-MoreUtils/List-MoreUtils_0.412_src_all.tar.gz
+                    </package>
+
+                    <!-- Perl Module Moo -->
+                    <package sha256sum="782d6246f9f5f5d9290c576e5819cd495596abe28f36d192a8c4abf94f5dd2c3">
+                        http://search.cpan.org/CPAN/authors/id/H/HA/HAARG/Moo-2.002004.tar.gz
+                    </package>
+                    <package sha256sum="4c44fe0ea255a9fd00741ee545063f6692d2a28e7ef2fbaad1b24a92803362a4">
+                        http://search.cpan.org/CPAN/authors/id/Z/ZE/ZEFRAM/Module-Runtime-0.014.tar.gz
+                    </package>
+                    <package sha256sum="b29824dc0d322e56da325f05185367eb443694716010b36693dd52ffbe8ec462">
+                        http://search.cpan.org/CPAN/authors/id/H/HA/HAARG/Devel-GlobalDestruction-0.13.tar.gz
+                    </package>
+                    <package sha256sum="b9e579b857d9bfd3b8391e4de6ee6529b4c6208c581c2a7cbf46a86618297cb8">
+                        http://search.cpan.org/CPAN/authors/id/F/FR/FREW/Sub-Exporter-Progressive-0.001012.tar.gz
+                    </package>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>