Mercurial > repos > iuc > package_ncbi_vdb_2_5_2

changeset 1:17ae6c0040ea draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
author iuc
date Tue, 01 Mar 2016 07:08:58 -0500
parents b980182ad267
children
files tool_dependencies.xml
diffstat 1 files changed, 11 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Dec 06 09:03:18 2015 -0500
+++ b/tool_dependencies.xml	Tue Mar 01 07:08:58 2016 -0500
@@ -1,5 +1,11 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libxml2" version="2.9.3">
+        <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
     <package name="ngs_sdk" version="1.1.3">
         <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
@@ -8,14 +14,17 @@
             <actions>
                 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="perl" version="5.18.1" />
                     </repository>
+                    <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="libxml2" version="2.9.3" />
+                    </repository>
                     <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="ngs_sdk" version="1.1.3" />
                     </repository>
                 </action>
-                <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --build=$INSTALL_DIR</action>
+                <action type="autoconf">--prefix=$INSTALL_DIR --with-ngs-sdk-prefix=$NGS_SDK_DIR --with-xml2-prefix=$LIBXML2_ROOT_DIR --build=$INSTALL_DIR</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>
                     <destination_directory>$INSTALL_DIR/</destination_directory>