Mercurial > repos > iuc > package_numpy_1_9

changeset 5:842bb2f02723 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit bbfd77c34b609b86ef3a24525dae1127d8b3d99b
author iuc
date Mon, 02 May 2016 16:13:31 -0400
parents c8f7a7d73466
children 83d12e13dbbd
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Dec 31 14:01:41 2015 -0500
+++ b/tool_dependencies.xml	Mon May 02 16:13:31 2016 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
         <package name="atlas" version="3.10.2">
-            <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+            <repository changeset_revision="f27d2f8761ae" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
         </package>
         <package name="python" version="2.7">
             <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
@@ -9,16 +9,17 @@
         <package name="numpy" version="1.9">
             <install version="1.0">
                 <actions>
+                    <action sha256sum="9753003ab7c489968eb260e5460556fd7d533a8e11a9d5326e0995bd1aa21318" type="download_by_url">https://depot.galaxyproject.org/software/numpy/numpy_1.9p1_src_all.tar.gz</action>
+                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
                     <action type="set_environment_for_install">
-                        <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <repository changeset_revision="f27d2f8761ae" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                             <package name="atlas" version="3.10.2" />
                         </repository>
                     </action>
-                    <action type="setup_python_environment">
-                        <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                            <package name="python" version="2.7" />
-                        </repository>
-                        <package md5sum="78842b73560ec378142665e712ae4ad9">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package>
+                    <action type="shell_command">
+                        export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
+                        export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
+                        python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
                     </action>
                     <action type="set_environment">
                         <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>