Mercurial > repos > iuc > package_numpy_1_9

changeset 4:c8f7a7d73466 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 2249d643284ee782d882cd200729a86a2c6bb744
author iuc
date Thu, 31 Dec 2015 14:01:41 -0500
parents 9cc1138e5e3e
children 842bb2f02723
files tool_dependencies.xml
diffstat 1 files changed, 10 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Oct 02 09:10:47 2015 -0400
+++ b/tool_dependencies.xml	Thu Dec 31 14:01:41 2015 -0500
@@ -3,28 +3,30 @@
         <package name="atlas" version="3.10.2">
             <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
         </package>
+        <package name="python" version="2.7">
+            <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        </package>
         <package name="numpy" version="1.9">
             <install version="1.0">
                 <actions>
-                    <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5#510cee1c6a131e0a9eb759aa2cc62609</action>
-                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
                     <action type="set_environment_for_install">
                         <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                             <package name="atlas" version="3.10.2" />
                         </repository>
                     </action>
-                    <action type="shell_command">
-                        export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
-                        export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
-                        python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+                    <action type="setup_python_environment">
+                        <repository changeset_revision="8b09fe018cac" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="python" version="2.7" />
+                        </repository>
+                        <package md5sum="78842b73560ec378142665e712ae4ad9">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package>
                     </action>
                     <action type="set_environment">
                         <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
-                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                         <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                         <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
-                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable>
+                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
                         <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
                     </action>
                 </actions>
             </install>