Mercurial > repos > iuc > package_nwalign_0_3_1
changeset 0:34b8e5cd74b6 draft
Imported from capsule None
| author | iuc |
|---|---|
| date | Thu, 23 Apr 2015 09:07:05 -0400 |
| parents | |
| children | 82ffa9e32988 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 29 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Apr 23 09:07:05 2015 -0400 @@ -0,0 +1,29 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="numpy" version="1.9"> + <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="nwalign" version="0.3.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/n/nwalign/nwalign-0.3.1.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="84e97f5cd3ab" name="package_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="numpy" version="1.9" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="NWALIGN_ROOT_PATH">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>Compiling nwalign requires a C compiler (typically gcc).</readme> + </package> +</tool_dependency>