comparison tool_dependencies.xml @ 0:0aeb3a1b5106 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty

0:0aeb3a1b5106

<?xml version="1.0"?>
<tool_dependency>
    <package name="progressivemauve" version="2.4.0">
        <install version="1.0">
            <actions_group>
                <actions os="linux" architecture="x86_64">
                    <action type="download_by_url">http://darlinglab.org/mauve/downloads/mauve_linux_2.4.0.tar.gz</action>
                    <action type="move_file">
                        <source>linux-x64/progressiveMauve</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action>
                    <action type="move_file">
                        <source>linux-x64/mauveAligner</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action>
                </actions>

                <actions os="darwin" architecture="x86_64">
                    <action type="download_by_url">http://darlinglab.org/mauve/downloads/Mauve-2.4.0.dmg </action>
                    <action type="shell_command">
                        hdiutil attach Mauve-2.4.0.dmg &amp;&amp;
                        mkdir -p $INSTALL_DIR/bin &amp;&amp;
                        cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/progressiveMauve $INSTALL_DIR/bin &amp;&amp;
                        cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/mauveAligner $INSTALL_DIR/bin &amp;&amp;
                        hdiutil detach /Volumes/Mauve-2.4.0
                    </action>
                </actions>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme><![CDATA[
Mauve is free of charge, open-source software licensed under the GNU GPL.

Mauve is a system for constructing multiple genome alignments in the presence
of large-scale evolutionary events such as rearrangement and inversion.
Multiple genome alignments provide a basis for research into comparative
genomics and the study of genome-wide evolutionary dynamics.

http://darlinglab.org/mauve/
]]>
        </readme>
    </package>
</tool_dependency>