Mercurial > repos > iuc > package_pysam_0_7_7

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_pysam_0_7_7 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:46:47 -0400
parents b62538c8c664
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<?xml version="1.0"?>
<tool_dependency>
    <package name="ez_setup" version="0.9">
        <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="pysam" version="0.7.7">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.7.7.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="ez_setup" version="0.9" />
                    </repository>
                </action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
        </readme>
    </package>
</tool_dependency>