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comparison tool_dependencies.xml @ 3:ed2fa0e530f3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit bfb533859ffc2fe69cb9297118210dd743d01b01-dirty
author iuc
date Fri, 09 Oct 2015 16:37:48 -0400
parents 5caf592bb259
children eb37ce21eef1
comparison
equal deleted inserted replaced
2:5caf592bb259 3:ed2fa0e530f3
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="zlib" version="1.2.8"> 3 <package name="zlib" version="1.2.8">
4 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="readline" version="6.2"> 6 <package name="readline" version="6.3">
7 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="bzlib" version="1.0.6"> 9 <package name="bzlib" version="1.0.6">
10 <repository changeset_revision="574845b950b5" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="574845b950b5" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="xz" version="5.0.5"> 12 <package name="xz" version="5.0.5">
13 <repository changeset_revision="9c92f8d0575b" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="9c92f8d0575b" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <!--
16 <package name="openssl" version="1.0">
17 <repository name="package_openssl_1_0" owner="iuc" prior_installation_required="True" />
18 </package>
19 -->
20 <package name="sqlite" version="3.8.3"> 15 <package name="sqlite" version="3.8.3">
21 <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
22 </package> 17 </package>
23 <package name="gdbm" version="1.11"> 18 <package name="gdbm" version="1.11">
24 <repository changeset_revision="ed2537bccffc" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="ed2537bccffc" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
25 </package> 20 </package>
26 <package name="ncurses" version="5.9"> 21 <package name="ncurses" version="6.0">
27 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="c921f7ce9ca7" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
28 </package> 23 </package>
29 <package name="python" version="2.7"> 24 <package name="python" version="2.7">
30 <install version="1.0"> 25 <install version="1.0">
31 <actions> 26 <actions>
32 <action type="download_by_url">https://www.python.org/ftp/python/2.7.10/Python-2.7.10.tgz</action> 27 <action type="download_by_url">https://www.python.org/ftp/python/2.7.10/Python-2.7.10.tgz</action>
33 28
34 <action type="set_environment_for_install"> 29 <action type="set_environment_for_install">
35 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 30 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
36 <package name="zlib" version="1.2.8" /> 31 <package name="zlib" version="1.2.8" />
37 </repository> 32 </repository>
38 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 33 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
39 <package name="readline" version="6.2" /> 34 <package name="readline" version="6.3" />
40 </repository> 35 </repository>
41 <repository changeset_revision="574845b950b5" name="package_bzlib_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 36 <repository changeset_revision="574845b950b5" name="package_bzlib_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
42 <package name="bzlib" version="1.0.6" /> 37 <package name="bzlib" version="1.0.6" />
43 </repository> 38 </repository>
44 <repository changeset_revision="9c92f8d0575b" name="package_xz_5_0_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 39 <repository changeset_revision="9c92f8d0575b" name="package_xz_5_0_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
45 <package name="xz" version="5.0.5" /> 40 <package name="xz" version="5.0.5" />
46 </repository> 41 </repository>
47 <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 42 <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
48 <package name="sqlite" version="3.8.3" /> 43 <package name="sqlite" version="3.8.3" />
49 </repository> 44 </repository>
50 <!--
51 <repository name="package_openssl_1_0" owner="iuc">
52 <package name="openssl" version="1.0" />
53 </repository>
54 -->
55 <repository changeset_revision="ed2537bccffc" name="package_gdbm_1_11" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 45 <repository changeset_revision="ed2537bccffc" name="package_gdbm_1_11" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
56 <package name="gdbm" version="1.11" /> 46 <package name="gdbm" version="1.11" />
57 </repository> 47 </repository>
58 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 48 <repository changeset_revision="c921f7ce9ca7" name="package_ncurses_6_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
59 <package name="ncurses" version="5.9" /> 49 <package name="ncurses" version="6.0" />
60 </repository> 50 </repository>
61 </action> 51 </action>
62 <!-- by default python is not looking af LD_INCLUDE_PATH and Co. --> 52 <!-- by default python is not looking af LD_INCLUDE_PATH and Co. -->
63 <action type="shell_command">sed -i -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action> 53 <action type="shell_command">sed -i.bak -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>
64 54
65 <action type="autoconf" /> 55 <action type="autoconf" />
66 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/6.1.tar.bz2</action> 56 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/18.2.tar.bz2</action>
67 <action type="shell_command">tar -xjf 6.1.tar.bz2</action> 57 <action type="shell_command">tar -xjf 18.2.tar.bz2</action>
68 <action type="change_directory">pypa-setuptools-7ea80190d494</action> 58 <action type="change_directory">pypa-setuptools-1a981f2e5031</action>
69 59
70 <action type="shell_command"> 60 <action type="shell_command">
71 export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp; 61 export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
72 export PYTHONHOME=$INSTALL_DIR &amp;&amp; 62 export PYTHONHOME=$INSTALL_DIR &amp;&amp;
73 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp; 63 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp;
77 </action> 67 </action>
78 <action type="set_environment"> 68 <action type="set_environment">
79 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 69 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
80 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 70 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
81 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> 71 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
72 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7</environment_variable>
82 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable> 73 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
83 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> 74 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
84 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> 75 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
76 <environment_variable action="prepend_to" name="PYTHON_ROOT_DIR">$INSTALL_DIR</environment_variable>
85 <!-- 77 <!--
86 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/pkgconfig</environment_variable> 78 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/pkgconfig</environment_variable>
87 <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/</environment_variable> 79 <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/</environment_variable>
88 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/</environment_variable> 80 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/</environment_variable>
89 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[OPENSSL_ROOT_DIR]/include/</environment_variable> 81 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[OPENSSL_ROOT_DIR]/include/</environment_variable>