Mercurial > repos > iuc > package_python_2_7

changeset 3:ed2fa0e530f3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit bfb533859ffc2fe69cb9297118210dd743d01b01-dirty
author iuc
date Fri, 09 Oct 2015 16:37:48 -0400
parents 5caf592bb259
children eb37ce21eef1
files tool_dependencies.xml
diffstat 1 files changed, 14 insertions(+), 22 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Aug 10 16:52:13 2015 -0400
+++ b/tool_dependencies.xml	Fri Oct 09 16:37:48 2015 -0400
@@ -3,8 +3,8 @@
   <package name="zlib" version="1.2.8">
     <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
-  <package name="readline" version="6.2">
-    <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <package name="readline" version="6.3">
+    <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
   <package name="bzlib" version="1.0.6">
     <repository changeset_revision="574845b950b5" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
@@ -12,19 +12,14 @@
   <package name="xz" version="5.0.5">
     <repository changeset_revision="9c92f8d0575b" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
-    <!--
-  <package name="openssl" version="1.0">
-    <repository name="package_openssl_1_0" owner="iuc" prior_installation_required="True" />
-  </package>
-    -->
   <package name="sqlite" version="3.8.3">
     <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
   <package name="gdbm" version="1.11">
     <repository changeset_revision="ed2537bccffc" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
-  <package name="ncurses" version="5.9">
-    <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <package name="ncurses" version="6.0">
+    <repository changeset_revision="c921f7ce9ca7" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
   <package name="python" version="2.7">
     <install version="1.0">
@@ -35,8 +30,8 @@
           <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
             <package name="zlib" version="1.2.8" />
           </repository>
-          <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-            <package name="readline" version="6.2" />
+          <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+            <package name="readline" version="6.3" />
           </repository>
           <repository changeset_revision="574845b950b5" name="package_bzlib_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
             <package name="bzlib" version="1.0.6" />
@@ -47,25 +42,20 @@
           <repository changeset_revision="c8a5c11cc921" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
             <package name="sqlite" version="3.8.3" />
           </repository>
-            <!--
-          <repository name="package_openssl_1_0" owner="iuc">
-            <package name="openssl" version="1.0" />
-          </repository>
-            -->
           <repository changeset_revision="ed2537bccffc" name="package_gdbm_1_11" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
             <package name="gdbm" version="1.11" />
           </repository>
-          <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-            <package name="ncurses" version="5.9" />
+          <repository changeset_revision="c921f7ce9ca7" name="package_ncurses_6_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+            <package name="ncurses" version="6.0" />
           </repository>
         </action>
         <!-- by default python is not looking af LD_INCLUDE_PATH and Co. -->
-        <action type="shell_command">sed -i -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>
+        <action type="shell_command">sed -i.bak -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>
 
         <action type="autoconf" />
-        <action type="download_file">https://bitbucket.org/pypa/setuptools/get/6.1.tar.bz2</action>
-        <action type="shell_command">tar -xjf 6.1.tar.bz2</action>
-        <action type="change_directory">pypa-setuptools-7ea80190d494</action>
+        <action type="download_file">https://bitbucket.org/pypa/setuptools/get/18.2.tar.bz2</action>
+        <action type="shell_command">tar -xjf 18.2.tar.bz2</action>
+        <action type="change_directory">pypa-setuptools-1a981f2e5031</action>
 
         <action type="shell_command">
             export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
@@ -79,9 +69,11 @@
             <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
             <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
             <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
+            <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7</environment_variable>
             <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
             <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
             <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
+            <environment_variable action="prepend_to" name="PYTHON_ROOT_DIR">$INSTALL_DIR</environment_variable>
             <!--
             <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/pkgconfig</environment_variable>
             <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/</environment_variable>