annotate tool_dependencies.xml @ 0:a21ad830219b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bx_python_0_7 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty

<?xml version="1.0"?>
<tool_dependency>
    <package name="numpy" version="1.9">
        <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="python" version="2.7">
        <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bx-python" version="0.7.2">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                   <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7" />
                   </repository>
                    <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
                    <package>https://pypi.python.org/packages/source/b/bx-python/bx-python-0.7.2.tar.gz</package>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="BX_PYTHON_ROOT_DIR">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="PYTHONPATH_BX_PYTHON">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="PATH_BX_PYTHON">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Installation of bx-python. The installation can be accessed via BX_PYTHON_PATH.
        </readme>
    </package>
</tool_dependency>