Mercurial > repos > iuc > package_python_2_7_gffutils_0_8

changeset 0:9dd9bde43a94 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_gffutils_0_8 commit d094788c200e3ecf24f2a429000c888e82131ed1
author iuc
date Mon, 19 Oct 2015 16:58:36 -0400
parents
children 79727e2f9dbf
files tool_dependencies.xml
diffstat 1 files changed, 30 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Oct 19 16:58:36 2015 -0400
@@ -0,0 +1,30 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="b1a672a0df3c" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="gffutils" version="0.8">
+        <install version="1.0">
+            <actions>
+                <action type="setup_python_environment">
+                   <repository changeset_revision="b1a672a0df3c" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                       <package name="python" version="2.7.10" />
+                   </repository>
+                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+                    <package>https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz#md5=476881ef4012262dfc8adc645ee786c4</package>
+                    <package>https://pypi.python.org/packages/source/a/argh/argh-0.26.1.tar.gz</package>
+                    <package>https://pypi.python.org/packages/source/a/argcomplete/argcomplete-0.8.9.tar.gz#md5=02861a1bd74943edc48741c06e125b6a</package>
+                    <package>https://pypi.python.org/packages/source/s/simplejson/simplejson-3.7.3.tar.gz</package>
+                    <package>https://github.com/mdshw5/pyfaidx/archive/v0.4.1.1.tar.gz</package>
+                    <package>https://pypi.python.org/packages/source/g/gffutils/gffutils-0.8.4rc1.tar.gz#md5=9d46b3dfac35ad812df2448f20c5e8cc</package>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="GFFUTILS_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme> GFF and GTF file manipulation and interconversion.</readme>
+    </package>
+</tool_dependency>