annotate tool_dependencies.xml @ 4:57b37f63cb84 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_numpy_1_9 commit 74564d1278e218c8c77ecdb5071962e86f3b8b94

<?xml version="1.0"?>
<tool_dependency>
    <package name="atlas" version="3.10.2">
        <repository changeset_revision="f27d2f8761ae" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="python" version="2.7.10">
        <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
        <package name="numpy" version="1.9">
            <install version="1.0">
                <actions>
                    <action type="setup_python_environment">
                       <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                           <package name="python" version="2.7.10" />
                       </repository>
                        <repository changeset_revision="f27d2f8761ae" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                            <package name="atlas" version="3.10.2" />
                        </repository>
                        <package sha256sum="9753003ab7c489968eb260e5460556fd7d533a8e11a9d5326e0995bd1aa21318">https://depot.galaxyproject.org/software/numpy/numpy_1.9p1_src_all.tar.gz</package>
                    </action>
                    <action type="set_environment">
                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable>
                        <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
                        <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
                    </action>
                </actions>
            </install>
            <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
        </package>
</tool_dependency>