Mercurial > repos > iuc > package_python_2_7_pybedtools_0_6_9

annotate tool_dependencies.xml @ 3:712cddf4f496 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa
author iuc
date Wed, 02 Dec 2015 17:38:04 -0500
parents dc78e2e0f51a
children c886a3e8785c
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="tabix" version="0.2.6">
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4 <repository changeset_revision="389d2376b60b" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
899ca0558676 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
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5 </package>
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6 <package name="samtools" version="0.1.19">
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7 <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
899ca0558676 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
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8 </package>
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9 <package name="bedtools" version="2.22">
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10 <repository changeset_revision="960f83563956" name="package_bedtools_2_22" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="cython" version="0.20.1">
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13 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="python" version="2.7.10">
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16 <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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17 </package>
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18 <package name="pybedtools" version="0.6.9">
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19 <install version="1.0">
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20 <actions>
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21 <action type="setup_python_environment">
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22 <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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23 <package name="python" version="2.7.10" />
0
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24 </repository>
899ca0558676 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
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25 <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
899ca0558676 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
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26 <package name="cython" version="0.20.1" />
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27 </repository>
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28 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
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29 <package>https://github.com/daler/pybedtools/archive/v0.6.9.tar.gz</package>
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30 </action>
899ca0558676 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
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31 <action type="set_environment">
899ca0558676 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pybedtools_0_6_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
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32 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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33 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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34 <environment_variable action="set_to" name="PYTHONPATH_PYBEDTOOLS">$INSTALL_DIR</environment_variable>
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35 <environment_variable action="set_to" name="PATH_PYBEDTOOLS">$INSTALL_DIR/bin</environment_variable>
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36 <environment_variable action="set_to" name="PYBEDTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
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37 </action>
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38 </actions>
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39 </install>
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40 <readme>Compiling pybedtools requires cython and the gcc compiler.
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41 https://github.com/daler/pybedtools
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42 </readme>
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43 </package>
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44 </tool_dependency>