annotate tool_dependencies.xml @ 3:08db58be052a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa

<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7.10">
        <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="pysam" version="0.8.3">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                   <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7.10" />
                   </repository>
                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
                    <package md5sum="b1ae2a8ec3c6d20be30b2bc1aa995bbf">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz</package>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="PYTHONPATH_PYSAM">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="PATH_PYSAM">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="set_to" name="PYSAM_ROOT_DIR">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
        </readme>
    </package>
</tool_dependency>