Mercurial > repos > iuc > package_python_2_7_scipy_0_16
changeset 0:519ecab389f2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_16 commit d094788c200e3ecf24f2a429000c888e82131ed1
| author | iuc |
|---|---|
| date | Mon, 19 Oct 2015 17:00:17 -0400 |
| parents | |
| children | c8ec41c95516 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 43 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Oct 19 17:00:17 2015 -0400 @@ -0,0 +1,43 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="atlas" version="3.10.2"> + <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="numpy" version="1.9"> + <repository changeset_revision="9f9eface3306" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="python" version="2.7.10"> + <repository changeset_revision="b1a672a0df3c" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="scipy" version="0.16"> + <install version="1.0"> + <actions> + <action type="setup_python_environment"> + <repository changeset_revision="b1a672a0df3c" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="python" version="2.7.10" /> + </repository> + <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="atlas" version="3.10.2" /> + </repository> + <repository changeset_revision="9f9eface3306" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="numpy" version="1.9" /> + </repository> + <!-- allow downloading and installing an Python package from https://pypi.org/ --> + <package md5sum="eb95dda0f36cc3096673993a350cde77">https://pypi.python.org/packages/source/s/scipy/scipy-0.16.0.tar.gz</package> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="SCIPY_ROOT_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme> + </package> +</tool_dependency>