Mercurial > repos > iuc > package_sra_toolkit_2_6_2
annotate tool_dependencies.xml @ 0:98414d1f9480 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
author | iuc |
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date | Tue, 17 May 2016 14:14:22 -0400 |
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98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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1 <?xml version="1.0"?> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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2 <tool_dependency> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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3 <package name="perl" version="5.18.1"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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4 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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5 </package> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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6 <package name="libmagic" version="5.25"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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7 <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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8 </package> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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9 <package name="ncbi_vdb" version="2.6.2"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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10 <repository changeset_revision="be38d36c735d" name="package_ncbi_vdb_2_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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11 </package> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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12 <package name="ngs_sdk" version="1.2.3"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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13 <repository changeset_revision="3da0f4d34e92" name="package_ngs_sdk_1_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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14 </package> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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15 <package name="sra_toolkit" version="2.6.2"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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16 <install version="1.0"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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17 <actions> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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18 <action sha256sum="7aa1ec118486cd877bf2976818a3f319674584f3d04931a6ce2a92f6a9defbc1" type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.6.2.tar.gz</action> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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19 <action type="set_environment_for_install"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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20 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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21 <package name="perl" version="5.18.1" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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22 </repository> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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23 <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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24 <package name="libmagic" version="5.25" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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25 </repository> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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26 <repository changeset_revision="be38d36c735d" name="package_ncbi_vdb_2_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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27 <package name="ncbi_vdb" version="2.6.2" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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28 </repository> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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29 <repository changeset_revision="3da0f4d34e92" name="package_ngs_sdk_1_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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30 <package name="ngs_sdk" version="1.2.3" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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31 </repository> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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32 </action> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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33 <action type="shell_command"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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34 ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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35 </action> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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36 <action type="make_install" /> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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37 <action type="set_environment"> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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39 </action> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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40 </actions> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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41 </install> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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42 <readme> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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43 Tools from NCBI SRA Toolkit for extracting FASTQ and SAM format reads from SRA format archives. |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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44 This software release was designed to run under Linux, MacOSX operating systems on Intel x86-compatible 64 bit architectures. |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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45 When running on Amazon EC2, be sure to keep in mind the size limitation of EBS storage devices when requesting a |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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46 download of a large SRA data set. |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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47 |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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48 Build Requirements: |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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49 - make |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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50 - git |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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51 - gcc |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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52 - g++ |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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53 - libxml2 |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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54 - libcurl4 |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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55 - zlib |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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56 |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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57 On a debian based Linux OS use: |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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58 |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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59 apt-get install build-essential libxml2-dev libcurl4-openssl-dev zlib-dev |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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60 |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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61 </readme> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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62 </package> |
98414d1f9480
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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63 </tool_dependency> |