Mercurial > repos > iuc > package_tophat_2_0_14
view tool_dependencies.xml @ 4:b13271391f95 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit f077faa1ffe22597b4eef5ed1f216a53be3aae7b
author | iuc |
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date | Fri, 06 Nov 2015 16:30:31 -0500 |
parents | 536f7bb5616d |
children |
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<?xml version="1.0"?> <tool_dependency> <package name="tophat" version="2.0.14"> <install version="1.0"> <actions_group> <actions architecture="x86_64" os="linux"> <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="shell_command">sed -i.bak 's#/build/dest#$INSTALL_DIR#' $INSTALL_DIR/bin/tophat2</action> </actions> <actions architecture="x86_64" os="darwin"> <action type="download_by_url">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.OSX_x86_64.tar.gz</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> <actions> <action type="download_by_url">http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.tar.gz</action> <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> <action type="make_install" /> </actions> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions_group> </install> <readme /> </package> </tool_dependency>