Mercurial > repos > iuc > package_tophat_2_0_14

changeset 0:995175fb61c4 draft

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Uploaded
author iuc
date Thu, 14 May 2015 09:38:47 -0400
parents
children 0c83efe0936b
files tool_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 14 09:38:47 2015 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="tophat" version="2.0.14">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                <actions>
+                    <action type="download_by_url">http://tophat.cbcb.umd.edu/downloads/tophat-2.0.14.tar.gz</action>
+                    <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
+                    <action type="make_install" />
+                </actions>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>