Mercurial > repos > iuc > package_vcftools_0_1_12b
changeset 0:554cce8d37fb draft
Imported from capsule None
author | iuc |
---|---|
date | Mon, 11 Aug 2014 08:27:41 -0400 |
parents | |
children | a655cb1dfc58 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 21 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Aug 11 08:27:41 2014 -0400 @@ -0,0 +1,21 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="vcftools" version="0.1.12b"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.12b.tar.gz</action> + <action type="shell_command">make</action> + <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action> + <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. --> + <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable> + </action> + </actions> + </install> + <readme> + A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. + http://vcftools.sourceforge.net/ + </readme> + </package> +</tool_dependency>