annotate tool_dependencies.xml @ 0:54e961ee33d4 draft

Imported from capsule None

<?xml version="1.0"?>
<tool_dependency>
  <package name="perl" version="5.18.1">
      <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="vienna_rna" version="1.8.5">
      <install version="1.0">
          <actions>
              <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
                <action type="set_environment_for_install">
                  <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                      <package name="perl" version="5.18.1" />
                    </repository>
                </action>
                <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
                <action type="change_directory">Perl</action>
                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
                <action type="change_directory">..</action>
                <action type="make_install" />
                <action type="set_environment">
                  <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
                    <environment_variable action="set_to" name="ROOT_VIENNA_RNA_DIR">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme>
    </package>
</tool_dependency>