Mercurial > repos > iuc > package_vt_5c735ab14b5603d9f14da6ee0e63d86ba3779934

changeset 0:91635ed3dceb draft

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Imported from capsule None
author bgruening
date Thu, 14 Aug 2014 07:41:49 -0400
parents
children 294fe74bded6
files tool_dependencies.xml
diffstat 1 files changed, 28 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Aug 14 07:41:49 2014 -0400
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vt" version="5c735ab14b5603d9f14da6ee0e63d86ba3779934">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone --recursive https://github.com/atks/vt.git</action>
+                <action type="shell_command">git reset --hard 5c735ab14b5603d9f14da6ee0e63d86ba3779934</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>vt</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="VT_ROOT_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
+            http://genome.sph.umich.edu/wiki/Vt
+            https://github.com/atks/vt
+        </readme>
+    </package>
+</tool_dependency>
+
+
+