annotate test-data/pairs_output_yaml.stats @ 9:d3a7b17714c1 draft

planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
author iuc
date Tue, 21 May 2024 16:05:04 +0000
parents 44cb74c154bc
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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1 no_filter:
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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2 total: 592
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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3 total_unmapped: 4
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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4 total_single_sided_mapped: 147
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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5 total_mapped: 441
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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6 total_nodups: 441
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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7 cis: 441
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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8 pair_types:
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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9 UU: 405
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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10 NR: 119
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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11 MU: 21
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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12 UR: 19
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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13 RU: 17
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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14 MR: 6
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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15 MM: 4
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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16 NU: 1
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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17 cis_1kb+: 75
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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18 cis_2kb+: 72
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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19 cis_4kb+: 70
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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20 cis_10kb+: 67
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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21 cis_20kb+: 61
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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22 cis_40kb+: 61
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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23 summary:
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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24 frac_cis: 1.0
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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25 frac_cis_1kb+: 0.17006802721088435
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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26 frac_cis_2kb+: 0.16326530612244897
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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27 frac_cis_4kb+: 0.15873015873015872
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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28 frac_cis_10kb+: 0.15192743764172337
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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29 frac_cis_20kb+: 0.1383219954648526
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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30 frac_cis_40kb+: 0.1383219954648526
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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31 frac_dups: 0.0
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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32 complexity_naive: .nan
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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33 dist_freq_convergence:
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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34 convergence_dist: 421697
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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35 strands_w_max_convergence_dist: ++
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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36 convergence_rel_diff_threshold: 0.05
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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37 n_cis_pairs_below_convergence_dist:
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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38 ++: 25
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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39 --: 26
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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parents: 5
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40 -+: 7
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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41 +-: 383
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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42 n_cis_pairs_below_convergence_dist_all_strands: 441
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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43 n_cis_pairs_above_convergence_dist_all_strands: 0
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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44 frac_cis_in_cis_below_convergence_dist:
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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45 ++: 0.05668934240362812
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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46 --: 0.05895691609977324
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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47 -+: 0.015873015873015872
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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48 +-: 0.8684807256235828
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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49 frac_cis_in_cis_below_convergence_dist_all_strands: 1.0
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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50 frac_cis_in_cis_above_convergence_dist_all_strands: 0.0
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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51 frac_total_mapped_in_cis_below_convergence_dist:
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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52 ++: 0.05668934240362812
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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53 --: 0.05895691609977324
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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54 -+: 0.015873015873015872
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
55 +-: 0.8684807256235828
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
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56 frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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57 frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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58 frac_total_nodups_in_cis_below_convergence_dist:
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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parents: 5
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59 ++: 0.05668934240362812
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
60 --: 0.05895691609977324
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
61 -+: 0.015873015873015872
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
62 +-: 0.8684807256235828
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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63 frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0
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64 frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0
5
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65 chrom_freq:
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66 Test_seq/Test_seq: 441
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67 dist_freq:
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68 +-:
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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69 0: 0
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70 1: 0
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71 2: 0
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72 3: 0
8
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73 4: 0
5
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74 6: 0
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75 7: 0
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76 10: 0
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77 13: 0
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78 18: 0
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79 24: 0
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80 32: 0
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81 42: 7
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82 56: 7
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83 75: 2
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84 100: 3
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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85 133: 2
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86 178: 3
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87 237: 57
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88 316: 171
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89 422: 113
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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90 562: 0
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91 750: 1
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92 1000: 0
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93 1334: 1
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94 1778: 0
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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95 2371: 1
5
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96 3162: 0
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97 4217: 0
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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98 5623: 0
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99 7499: 2
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100 10000: 1
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101 13335: 1
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102 17783: 1
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103 23714: 0
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104 31623: 0
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105 42170: 0
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iuc
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324 42170: 10
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
325 56234: 2
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
326 74989: 1
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
327 100000: 4
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
328 133352: 3
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
329 177828: 2
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
330 237137: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
331 316228: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
332 421697: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
333 562341: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
334 749894: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
335 1000000: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
336 1333521: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
337 1778279: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
338 2371374: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
339 3162278: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
340 4216965: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
341 5623413: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
342 7498942: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
343 10000000: 0
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44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
344 13335214: 0
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a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
345 17782794: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
346 23713737: 0
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a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
347 31622777: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
348 42169650: 0
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a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
349 56234133: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
350 74989421: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
351 100000000: 0
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44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
352 133352143: 0
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a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
353 177827941: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
354 237137371: 0
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a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
355 316227766: 0
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44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
356 421696503: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
357 562341325: 0
8
44cb74c154bc planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 5
diff changeset
358 749894209: 0
5
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
359 1000000000: 0
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
360 chromsizes:
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
parents:
diff changeset
361 Test_seq: 450060