Mercurial > repos > iuc > pairtools_parse
view test-data/pairs_output_yaml.stats @ 9:d3a7b17714c1 draft
planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
author | iuc |
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date | Tue, 21 May 2024 16:05:04 +0000 |
parents | 44cb74c154bc |
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no_filter: total: 592 total_unmapped: 4 total_single_sided_mapped: 147 total_mapped: 441 total_nodups: 441 cis: 441 pair_types: UU: 405 NR: 119 MU: 21 UR: 19 RU: 17 MR: 6 MM: 4 NU: 1 cis_1kb+: 75 cis_2kb+: 72 cis_4kb+: 70 cis_10kb+: 67 cis_20kb+: 61 cis_40kb+: 61 summary: frac_cis: 1.0 frac_cis_1kb+: 0.17006802721088435 frac_cis_2kb+: 0.16326530612244897 frac_cis_4kb+: 0.15873015873015872 frac_cis_10kb+: 0.15192743764172337 frac_cis_20kb+: 0.1383219954648526 frac_cis_40kb+: 0.1383219954648526 frac_dups: 0.0 complexity_naive: .nan dist_freq_convergence: convergence_dist: 421697 strands_w_max_convergence_dist: ++ convergence_rel_diff_threshold: 0.05 n_cis_pairs_below_convergence_dist: ++: 25 --: 26 -+: 7 +-: 383 n_cis_pairs_below_convergence_dist_all_strands: 441 n_cis_pairs_above_convergence_dist_all_strands: 0 frac_cis_in_cis_below_convergence_dist: ++: 0.05668934240362812 --: 0.05895691609977324 -+: 0.015873015873015872 +-: 0.8684807256235828 frac_cis_in_cis_below_convergence_dist_all_strands: 1.0 frac_cis_in_cis_above_convergence_dist_all_strands: 0.0 frac_total_mapped_in_cis_below_convergence_dist: ++: 0.05668934240362812 --: 0.05895691609977324 -+: 0.015873015873015872 +-: 0.8684807256235828 frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0 frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0 frac_total_nodups_in_cis_below_convergence_dist: ++: 0.05668934240362812 --: 0.05895691609977324 -+: 0.015873015873015872 +-: 0.8684807256235828 frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0 frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0 chrom_freq: Test_seq/Test_seq: 441 dist_freq: +-: 0: 0 1: 0 2: 0 3: 0 4: 0 6: 0 7: 0 10: 0 13: 0 18: 0 24: 0 32: 0 42: 7 56: 7 75: 2 100: 3 133: 2 178: 3 237: 57 316: 171 422: 113 562: 0 750: 1 1000: 0 1334: 1 1778: 0 2371: 1 3162: 0 4217: 0 5623: 0 7499: 2 10000: 1 13335: 1 17783: 1 23714: 0 31623: 0 42170: 0 56234: 2 74989: 1 100000: 1 133352: 2 177828: 3 237137: 1 316228: 0 421697: 0 562341: 0 749894: 0 1000000: 0 1333521: 0 1778279: 0 2371374: 0 3162278: 0 4216965: 0 5623413: 0 7498942: 0 10000000: 0 13335214: 0 17782794: 0 23713737: 0 31622777: 0 42169650: 0 56234133: 0 74989421: 0 100000000: 0 133352143: 0 177827941: 0 237137371: 0 316227766: 0 421696503: 0 562341325: 0 749894209: 0 1000000000: 0 -+: 0: 0 1: 0 2: 0 3: 0 4: 0 6: 0 7: 0 10: 0 13: 0 18: 0 24: 0 32: 0 42: 0 56: 0 75: 0 100: 0 133: 0 178: 0 237: 0 316: 0 422: 0 562: 0 750: 0 1000: 0 1334: 0 1778: 0 2371: 0 3162: 0 4217: 0 5623: 0 7499: 0 10000: 1 13335: 1 17783: 0 23714: 0 31623: 0 42170: 1 56234: 0 74989: 0 100000: 0 133352: 3 177828: 0 237137: 0 316228: 1 421697: 0 562341: 0 749894: 0 1000000: 0 1333521: 0 1778279: 0 2371374: 0 3162278: 0 4216965: 0 5623413: 0 7498942: 0 10000000: 0 13335214: 0 17782794: 0 23713737: 0 31622777: 0 42169650: 0 56234133: 0 74989421: 0 100000000: 0 133352143: 0 177827941: 0 237137371: 0 316227766: 0 421696503: 0 562341325: 0 749894209: 0 1000000000: 0 --: 0: 0 1: 0 2: 0 3: 0 4: 0 6: 0 7: 0 10: 0 13: 0 18: 0 24: 0 32: 0 42: 0 56: 0 75: 0 100: 0 133: 0 178: 0 237: 0 316: 0 422: 0 562: 0 750: 0 1000: 1 1334: 0 1778: 0 2371: 1 3162: 0 4217: 0 5623: 0 7499: 0 10000: 0 13335: 0 17783: 0 23714: 0 31623: 0 42170: 21 56234: 1 74989: 0 100000: 2 133352: 0 177828: 0 237137: 0 316228: 0 421697: 0 562341: 0 749894: 0 1000000: 0 1333521: 0 1778279: 0 2371374: 0 3162278: 0 4216965: 0 5623413: 0 7498942: 0 10000000: 0 13335214: 0 17782794: 0 23713737: 0 31622777: 0 42169650: 0 56234133: 0 74989421: 0 100000000: 0 133352143: 0 177827941: 0 237137371: 0 316227766: 0 421696503: 0 562341325: 0 749894209: 0 1000000000: 0 ++: 0: 0 1: 0 2: 0 3: 0 4: 0 6: 0 7: 0 10: 0 13: 0 18: 0 24: 0 32: 0 42: 0 56: 0 75: 0 100: 0 133: 0 178: 0 237: 0 316: 0 422: 0 562: 0 750: 0 1000: 0 1334: 0 1778: 1 2371: 0 3162: 0 4217: 0 5623: 1 7499: 0 10000: 1 13335: 0 17783: 0 23714: 0 31623: 0 42170: 10 56234: 2 74989: 1 100000: 4 133352: 3 177828: 2 237137: 0 316228: 0 421697: 0 562341: 0 749894: 0 1000000: 0 1333521: 0 1778279: 0 2371374: 0 3162278: 0 4216965: 0 5623413: 0 7498942: 0 10000000: 0 13335214: 0 17782794: 0 23713737: 0 31622777: 0 42169650: 0 56234133: 0 74989421: 0 100000000: 0 133352143: 0 177827941: 0 237137371: 0 316227766: 0 421696503: 0 562341325: 0 749894209: 0 1000000000: 0 chromsizes: Test_seq: 450060