Mercurial > repos > iuc > pangolin
changeset 27:03ed9524dcd1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 533e4f638fe88be437066f2acb7aa2de710b8e2f
| author | iuc |
|---|---|
| date | Sun, 15 Jan 2023 12:35:01 +0000 |
| parents | 007ffbb11881 |
| children | 9d61d3fa046c |
| files | pangolin.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/pangolin.xml Sun Jan 15 10:34:09 2023 +0000 +++ b/pangolin.xml Sun Jan 15 12:35:01 2023 +0000 @@ -1,7 +1,7 @@ <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01"> <description>Phylogenetic Assignment of Outbreak Lineages</description> <macros> - <token name="@TOOL_VERSION@">4.1.3</token> + <token name="@TOOL_VERSION@">4.2</token> <token name="@PANGOLIN_DATA_VERSION@">1.17</token> <token name="@CONSTELLATIONS_VERSION@">0.1.10</token> <token name="@MIN_COMPATIBLE_PANGOLIN_DATA_FORMAT@">4</token> @@ -196,7 +196,7 @@ <param type="data" name="input1" format="fasta,fasta.gz" label="Input FASTA File(s)" /> <conditional name="engine"> <param argument="--analysis-mode" type="select" label="Analysis mode" - help="The analysis engine to use for lineage assignment. UShER is considered more accurate; pangoLEARN typically requires more memory, but might be faster in some cases."> + help="The analysis engine to use for lineage assignment. Note: In this version, UShER mode is implemented through the usher-sampled algorithm of UShER. If you prefer to run the original usher algorithm, please use version 4.1.3 of the tool."> <option value="usher">UShER</option> <option value="pangolearn">pangoLEARN</option> </param>