Mercurial > repos > iuc > pathview
comparison pathview.xml @ 2:fe154a7af404 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pathview commit f21f5effc122e992ed977bc42b27f9520f59a33b"
| author | iuc |
|---|---|
| date | Fri, 08 Apr 2022 15:36:51 +0000 |
| parents | 03c13085aecc |
| children | f1691de443a7 |
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| 1:03c13085aecc | 2:fe154a7af404 |
|---|---|
| 1 <tool id="pathview" name="Pathview" version="@VERSION@+@GALAXY_VERSION@"> | 1 <tool id="pathview" name="Pathview" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> |
| 2 <description>for pathway based data integration and visualization</description> | 2 <description>for pathway based data integration and visualization</description> |
| 3 <xrefs> | |
| 4 <xref type="bio.tools">pathview</xref> | |
| 5 </xrefs> | |
| 3 <macros> | 6 <macros> |
| 4 <token name="@VERSION@">1.24.0</token> | 7 <token name="@TOOL_VERSION@">1.24.0</token> |
| 5 <token name="@GALAXY_VERSION@">galaxy0</token> | 8 <token name="@VERSION_SUFFIX@">2</token> |
| 6 </macros> | 9 </macros> |
| 7 <requirements> | 10 <requirements> |
| 8 <requirement type="package" version="@VERSION@">bioconductor-pathview</requirement> | 11 <requirement type="package" version="@TOOL_VERSION@">bioconductor-pathview</requirement> |
| 9 <requirement type="package" version="3.8.2">bioconductor-org.ag.eg.db</requirement> | 12 <requirement type="package" version="3.8.2">bioconductor-org.ag.eg.db</requirement> |
| 10 <requirement type="package" version="3.8.2">bioconductor-org.at.tair.db</requirement> | 13 <requirement type="package" version="3.8.2">bioconductor-org.at.tair.db</requirement> |
| 11 <requirement type="package" version="3.8.2">bioconductor-org.bt.eg.db</requirement> | 14 <requirement type="package" version="3.8.2">bioconductor-org.bt.eg.db</requirement> |
| 12 <requirement type="package" version="3.8.2">bioconductor-org.ce.eg.db</requirement> | 15 <requirement type="package" version="3.8.2">bioconductor-org.ce.eg.db</requirement> |
| 13 <requirement type="package" version="3.8.2">bioconductor-org.cf.eg.db</requirement> | 16 <requirement type="package" version="3.8.2">bioconductor-org.cf.eg.db</requirement> |
| 80 <param name="one_id" type="text" label="KEGG pathway" help="KEGG pathway ID with 5 digits and without the 3 letter KEGG species code."> | 83 <param name="one_id" type="text" label="KEGG pathway" help="KEGG pathway ID with 5 digits and without the 3 letter KEGG species code."> |
| 81 <validator type="regex" message="It should be the 5 digits of the KEGG pathway ID.">^(?:\d\d\d\d\d)?$</validator> | 84 <validator type="regex" message="It should be the 5 digits of the KEGG pathway ID.">^(?:\d\d\d\d\d)?$</validator> |
| 82 </param> | 85 </param> |
| 83 </when> | 86 </when> |
| 84 <when value="multiple"> | 87 <when value="multiple"> |
| 85 <param name="tabular" type="data" format="tabular" optional="true" label="KEGG pathways" help="A table with one-column with KEGG pathways to plot"/> | 88 <param name="tabular" type="data" format="txt,tabular" optional="true" label="KEGG pathways" help="A table with one-column with KEGG pathways to plot"/> |
| 86 <param name="header" type="boolean" checked="true" label="Does the file have header (a first line with column names)?"/> | 89 <param name="header" type="boolean" checked="true" label="Does the file have header (a first line with column names)?"/> |
| 87 </when> | 90 </when> |
| 88 </conditional> | 91 </conditional> |
| 89 <param name="species" type="select" label="Species to use"> | 92 <param name="species" type="select" label="Species to use"> |
| 90 <option value="aga">Anopheles</option> | 93 <option value="aga">Anopheles</option> |