diff pathview.xml @ 2:fe154a7af404 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pathview commit f21f5effc122e992ed977bc42b27f9520f59a33b"

--- a/pathview.xml	Thu Jan 23 08:01:06 2020 -0500
+++ b/pathview.xml	Fri Apr 08 15:36:51 2022 +0000
@@ -1,11 +1,14 @@
-<tool id="pathview" name="Pathview" version="@VERSION@+@GALAXY_VERSION@">
+<tool id="pathview" name="Pathview" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
     <description>for pathway based data integration and visualization</description>
+    <xrefs>
+        <xref type="bio.tools">pathview</xref>
+    </xrefs>
     <macros>
-        <token name="@VERSION@">1.24.0</token>
-        <token name="@GALAXY_VERSION@">galaxy0</token>
+        <token name="@TOOL_VERSION@">1.24.0</token>
+        <token name="@VERSION_SUFFIX@">2</token>
     </macros>
     <requirements>
-        <requirement type="package" version="@VERSION@">bioconductor-pathview</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">bioconductor-pathview</requirement>
         <requirement type="package" version="3.8.2">bioconductor-org.ag.eg.db</requirement>
         <requirement type="package" version="3.8.2">bioconductor-org.at.tair.db</requirement>
         <requirement type="package" version="3.8.2">bioconductor-org.bt.eg.db</requirement>
@@ -82,7 +85,7 @@
                 </param>
             </when>
             <when value="multiple">
-                <param name="tabular" type="data" format="tabular" optional="true" label="KEGG pathways" help="A table with one-column with KEGG pathways to plot"/>
+                <param name="tabular" type="data" format="txt,tabular" optional="true" label="KEGG pathways" help="A table with one-column with KEGG pathways to plot"/>
                 <param name="header" type="boolean" checked="true" label="Does the file have header (a first line with column names)?"/>
             </when>
         </conditional>