Mercurial > repos > iuc > phyloseq_from_biom
view test-data/rich_dense_otu_table.biom @ 1:1feea247d08a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/phyloseq commit 10dfb1308ff858c6623c7dd9215a3bdf518427f9
author | iuc |
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date | Tue, 03 Dec 2024 17:45:38 +0000 |
parents | c0101c72b8af |
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{ "id":null, "format": "Biological Observation Matrix 1.0.0-dev", "format_url": "http://biom-format.org", "type": "OTU table", "generated_by": "QIIME revision XYZ", "date": "2011-12-19T19:00:00", "rows":[ {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} ], "columns":[ {"id":"Sample1", "metadata":{ "BarcodeSequence":"CGCTTATCGAGA", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample2", "metadata":{ "BarcodeSequence":"CATACCAGTAGC", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample3", "metadata":{ "BarcodeSequence":"CTCTCTACCTGT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample4", "metadata":{ "BarcodeSequence":"CTCTCGGCCTGT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}}, {"id":"Sample5", "metadata":{ "BarcodeSequence":"CTCTCTACCAAT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}}, {"id":"Sample6", "metadata":{ "BarcodeSequence":"CTAACTACCAAT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}} ], "matrix_type": "dense", "matrix_element_type": "int", "shape": [5,6], "data": [[0,0,1,0,0,0], [5,1,0,2,3,1], [0,0,1,4,2,0], [2,1,1,0,0,1], [0,1,1,0,0,0]] }