Mercurial > repos > iuc > plink
changeset 4:ac16d24f0d9d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 577ea693a59004c6fa892d079cd0b2b835ee59bf"
| author | iuc |
|---|---|
| date | Mon, 28 Sep 2020 17:00:56 +0000 |
| parents | 57ac42ec1be3 |
| children | 18be55ee8e08 |
| files | plink.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/plink.xml Fri Sep 25 17:48:45 2020 +0000 +++ b/plink.xml Mon Sep 28 17:00:56 2020 +0000 @@ -51,10 +51,10 @@ && ln -s '$inputs.inputs.bim' plink_input/plink_input.bim && ln -s '$inputs.inputs.fam' plink_input/plink_input.fam #elif $inputs.inputs.filetype == 'vcf': - #if $inputs.inputs.input.is_of_type('vcf'): + #if $inputs.inputs.input.is_of_type('bcf'): + && plink --bcf '$inputs.inputs.input' + #else: && plink --vcf '$inputs.inputs.input' - #else: - && plink --bcf '$inputs.inputs.input' #end if --out plink_input/plink_input #end if @@ -394,7 +394,7 @@ <param format='txt' name='fam' type='data' label='plink fam file'/> </when> <when value='vcf'> - <param name='input' format='vcf,bcf' type='data' label='VCF/BCF Input file'/> + <param name='input' format='vcf,vcf_bgzip,bcf' type='data' label='VCF/BCF Input file'/> </when> </conditional> <param name='pheno' type='data' format='txt,tabular' label='Phenotype file' help='Read phenotype values from the 3rd column of the specified space- or tab-delimited file, instead of the .fam or .ped file.' optional='true'/>