diff porechop.xml @ 3:543cbeef3949 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/porechop commit 6ea6e816d7c92599628ab3c0a0826fb7476270b0"

--- a/porechop.xml	Fri Apr 02 19:38:37 2021 +0000
+++ b/porechop.xml	Thu Feb 24 20:08:33 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="porechop" name="Porechop" version="@WRAPPER_VERSION@" profile="20.01">
+<tool id="porechop" name="Porechop" version="@WRAPPER_VERSION@+galaxy0" profile="20.01">
     <description>adapter trimmer for Oxford Nanopore reads</description>
     <macros>
         <token name="@WRAPPER_VERSION@">0.2.4</token>
@@ -32,7 +32,7 @@
 
     ]]></command>
     <inputs>
-        <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" />
+        <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz,fastq,fastq.gz" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" />
         <param name="format" type="select" label="Output format for the reads" help="Output format for the reads">
             <option selected="True" value="fasta">fasta</option>
             <option value="fastq">fastq</option>
@@ -105,6 +105,11 @@
             <output name="outfile" ftype="fastqsanger" file="out.fastq"/>
         </test>
         <test>
+            <param name="input_file" ftype="fastq.gz" value="test_format.fastq.gz"/>
+            <param name="format" value="fastq"/>
+            <output name="outfile" ftype="fastqsanger" file="out.fastq"/>
+        </test>
+        <test>
             <param name="input_file" ftype="fasta" value="test_format.fasta"/>
             <param name="format" value="fasta.gz"/>
             <output name="outfile" ftype="fasta.gz" file="out.fasta.gz" compare="sim_size"/>