Mercurial > repos > iuc > porechop
changeset 2:5f76b20953e5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/porechop commit e68e5869f08e66fbe2787f23b58c1d66e61d9df2"
| author | iuc |
|---|---|
| date | Fri, 02 Apr 2021 19:38:37 +0000 |
| parents | 93d623d9979c |
| children | 543cbeef3949 |
| files | porechop.xml test-data/test_format.fastq.gz |
| diffstat | 2 files changed, 7 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/porechop.xml Wed Sep 19 08:35:02 2018 -0400 +++ b/porechop.xml Fri Apr 02 19:38:37 2021 +0000 @@ -1,7 +1,10 @@ -<tool id="porechop" name="Porechop" version="0.2.3"> +<tool id="porechop" name="Porechop" version="@WRAPPER_VERSION@" profile="20.01"> <description>adapter trimmer for Oxford Nanopore reads</description> + <macros> + <token name="@WRAPPER_VERSION@">0.2.4</token> + </macros> <requirements> - <requirement type="package" version="0.2.3_seqan2.1.1">porechop</requirement> + <requirement type="package" version="@WRAPPER_VERSION@">porechop</requirement> </requirements> <version_command>porechop --version</version_command> <command detect_errors="exit_code"><![CDATA[ @@ -29,7 +32,7 @@ ]]></command> <inputs> - <param name="input_file" type="data" format="fasta,fastqsanger" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" /> + <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" /> <param name="format" type="select" label="Output format for the reads" help="Output format for the reads"> <option selected="True" value="fasta">fasta</option> <option value="fastq">fastq</option> @@ -97,7 +100,7 @@ <output name="outfile" ftype="fasta" file="out.fasta"/> </test> <test> - <param name="input_file" ftype="fasta" value="test_format.fasta"/> + <param name="input_file" ftype="fastqsanger.gz" value="test_format.fastq.gz"/> <param name="format" value="fastq"/> <output name="outfile" ftype="fastqsanger" file="out.fastq"/> </test>