comparison poretools_occupancy.xml @ 2:0433aad600e9 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5

1:338d15b8d6fb

<?xml version="1.0"?>
<tool id="poretools_occupancy" name="Plot performance" version="@VERSION@.1">
    <description>per cell in nanopore reads</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="aggressive">
    <![CDATA[
@MPLBACKEND@
poretools occupancy

        <param name="extension" type="select" label="File format for histogram">
            <option value="png">PNG</option>
            <option value="pdf">PDF</option>
            <option value="svg">SVG</option>
        </param>
        <param name="plot_type" argument="--plot-type" type="select" label="Plot type to generate">
            <option value="read_count">Read count</option>
            <option value="total_bp">Total base pairs</option>
        </param>
    </inputs>
    <outputs>

2:0433aad600e9

<tool id="poretools_occupancy" name="Plot performance" version="@VERSION@.1" profile="@PROFILE@">
    <description>per cell in nanopore reads</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements" />
    <command detect_errors="aggressive">
    <![CDATA[
@MPLBACKEND@
poretools occupancy

        <param name="extension" type="select" label="File format for histogram">
            <option value="png">PNG</option>
            <option value="pdf">PDF</option>
            <option value="svg">SVG</option>
        </param>
        <param argument="--plot-type" type="select" label="Plot type to generate">
            <option value="read_count">Read count</option>
            <option value="total_bp">Total base pairs</option>
        </param>
    </inputs>
    <outputs>