diff poretools_occupancy.xml @ 1:338d15b8d6fb draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"

--- a/poretools_occupancy.xml	Tue Dec 19 14:47:30 2017 -0500
+++ b/poretools_occupancy.xml	Sun Jan 19 09:09:55 2020 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="poretools_occupancy" name="Plot performance" version="@VERSION@.0">
+<tool id="poretools_occupancy" name="Plot performance" version="@VERSION@.1">
     <description>per cell in nanopore reads</description>
     <macros>
         <import>macros.xml</import>
@@ -7,12 +7,13 @@
     <expand macro="requirements" />
     <command detect_errors="aggressive">
     <![CDATA[
-        poretools occupancy
-            '$input'
-            --saveas occupancy.$extension
-            --plot-type $plot_type
-        &&
-        mv occupancy.$extension '$output'
+@MPLBACKEND@
+poretools occupancy
+    '$input'
+    --saveas occupancy.$extension
+    --plot-type $plot_type
+&&
+mv occupancy.$extension '$output'
     ]]>
     </command>
     <inputs>
@@ -35,13 +36,13 @@
             <expand macro="test_input" />
             <param name="extension" value="png" />
             <param name="plot_type" value="read_count" />
-	    <output name="output" file="poretools-occupancy-out1.png" ftype="png" lines_diff="420" />
+            <output name="output" file="poretools-occupancy-out1.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <expand macro="test_input" />
             <param name="extension" value="pdf" />
             <param name="plot_type" value="total_bp" />
-            <output name="output" file="poretools-occupancy-out1.pdf" ftype="pdf" lines_diff="36" />
+            <output name="output" file="poretools-occupancy-out1.pdf" ftype="pdf" lines_diff="384" />
         </test>
     </tests>
     <help>