Mercurial > repos > iuc > poretools_times
comparison poretools_times.xml @ 0:e5072f0d3772 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:52:30 -0500 |
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-1:000000000000 | 0:e5072f0d3772 |
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1 <?xml version="1.0"?> | |
2 <tool id="poretools_times" name="Extract time" version="@VERSION@.0"> | |
3 <description>and channel information from a set of FAST5 files</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements" /> | |
8 <command detect_errors="aggressive"> | |
9 <![CDATA[ | |
10 poretools times --utc '$input' > '$output' | |
11 ]]> | |
12 </command> | |
13 <inputs> | |
14 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> | |
15 </inputs> | |
16 <outputs> | |
17 <data name="output" format="tabular" /> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <expand macro="test_input" /> | |
22 <param name="types" value="fwd" /> | |
23 <param name="detailed" value="true" /> | |
24 <output name="output" file="poretools-times-out1.tabular" ftype="tabular" /> | |
25 </test> | |
26 <test> | |
27 <expand macro="test_input" /> | |
28 <param name="types" value="rev" /> | |
29 <param name="detailed" value="false" /> | |
30 <output name="output" file="poretools-times-out2.tabular" ftype="tabular" /> | |
31 </test> | |
32 <test> | |
33 <expand macro="test_input" /> | |
34 <param name="types" value="2D" /> | |
35 <param name="detailed" value="true" /> | |
36 <output name="output" file="poretools-times-out3.tabular" ftype="tabular" /> | |
37 </test> | |
38 <test> | |
39 <expand macro="test_input" /> | |
40 <param name="types" value="best" /> | |
41 <param name="detailed" value="false" /> | |
42 <output name="output" file="poretools-times-out4.tabular" ftype="tabular" /> | |
43 </test> | |
44 <test> | |
45 <expand macro="test_input" /> | |
46 <param name="types" value="all" /> | |
47 <param name="detailed" value="true" /> | |
48 <output name="output" file="poretools-times-out5.tabular" ftype="tabular" /> | |
49 </test> | |
50 </tests> | |
51 <help> | |
52 Collect read size statistics from a set of FAST5 files. | |
53 </help> | |
54 <expand macro="citations" /> | |
55 </tool> |