Mercurial > repos > iuc > poretools_times
view poretools_times.xml @ 0:e5072f0d3772 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:52:30 -0500 |
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<?xml version="1.0"?> <tool id="poretools_times" name="Extract time" version="@VERSION@.0"> <description>and channel information from a set of FAST5 files</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="aggressive"> <![CDATA[ poretools times --utc '$input' > '$output' ]]> </command> <inputs> <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> </inputs> <outputs> <data name="output" format="tabular" /> </outputs> <tests> <test> <expand macro="test_input" /> <param name="types" value="fwd" /> <param name="detailed" value="true" /> <output name="output" file="poretools-times-out1.tabular" ftype="tabular" /> </test> <test> <expand macro="test_input" /> <param name="types" value="rev" /> <param name="detailed" value="false" /> <output name="output" file="poretools-times-out2.tabular" ftype="tabular" /> </test> <test> <expand macro="test_input" /> <param name="types" value="2D" /> <param name="detailed" value="true" /> <output name="output" file="poretools-times-out3.tabular" ftype="tabular" /> </test> <test> <expand macro="test_input" /> <param name="types" value="best" /> <param name="detailed" value="false" /> <output name="output" file="poretools-times-out4.tabular" ftype="tabular" /> </test> <test> <expand macro="test_input" /> <param name="types" value="all" /> <param name="detailed" value="true" /> <output name="output" file="poretools-times-out5.tabular" ftype="tabular" /> </test> </tests> <help> Collect read size statistics from a set of FAST5 files. </help> <expand macro="citations" /> </tool>