Mercurial > repos > iuc > qiime_count_seqs
comparison count_seqs.xml @ 0:0b33f6fd92a3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
author | iuc |
---|---|
date | Fri, 19 May 2017 04:00:33 -0400 |
parents | |
children | bb0c29df7392 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:0b33f6fd92a3 |
---|---|
1 <tool id="qiime_count_seqs" name="Count sequences" version="@WRAPPER_VERSION@.0"> | |
2 <description>Count the sequences in a fasta file</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements"/> | |
7 <version_command>count_seqs.py --version</version_command> | |
8 <command detect_errors="aggressive"><![CDATA[ | |
9 count_seqs.py | |
10 --input_fps '$input_fps' | |
11 -o '$output_fp' | |
12 ]]></command> | |
13 <inputs> | |
14 <param argument="--input_fps" type="data" format="fasta" multiple="True" label="Input sequence file" help=""/> | |
15 </inputs> | |
16 <outputs> | |
17 <data name="output_fp" format="txt" label="${tool.name} on ${on_string}: sequence counts"/> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <param name="input_fps" value="count_seqs/in.fasta,count_seqs/in1.fasta,count_seqs/in2.fasta"/> | |
22 <output name="output_fp" ftype="txt"> | |
23 <assert_contents> | |
24 <has_text text="Sequence lengths"/> | |
25 <has_text text="Total"/> | |
26 </assert_contents> | |
27 </output> | |
28 </test> | |
29 </tests> | |
30 <help><![CDATA[ | |
31 **What it does** | |
32 | |
33 This tool counts the sequences in fasta files | |
34 | |
35 More information about this tool is available on | |
36 `QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_. | |
37 ]]></help> | |
38 <citations> | |
39 <expand macro="citations"/> | |
40 </citations> | |
41 </tool> |