diff count_seqs.xml @ 0:0b33f6fd92a3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/count_seqs.xml	Fri May 19 04:00:33 2017 -0400
@@ -0,0 +1,41 @@
+<tool id="qiime_count_seqs" name="Count sequences" version="@WRAPPER_VERSION@.0">
+    <description>Count the sequences in a fasta file</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <version_command>count_seqs.py --version</version_command>
+    <command detect_errors="aggressive"><![CDATA[
+        count_seqs.py
+            --input_fps '$input_fps'
+            -o '$output_fp'
+    ]]></command>
+    <inputs>
+        <param argument="--input_fps" type="data" format="fasta" multiple="True" label="Input sequence file" help=""/>
+    </inputs>
+    <outputs>
+        <data name="output_fp" format="txt" label="${tool.name} on ${on_string}: sequence counts"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input_fps" value="count_seqs/in.fasta,count_seqs/in1.fasta,count_seqs/in2.fasta"/>
+            <output name="output_fp" ftype="txt">
+                <assert_contents>
+                    <has_text text="Sequence lengths"/>
+                    <has_text text="Total"/>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+This tool counts the sequences in fasta files
+
+More information about this tool is available on
+`QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_.
+    ]]></help>
+    <citations>
+        <expand macro="citations"/>
+    </citations>
+</tool>