Mercurial > repos > iuc > qiime_filter_alignment

changeset 7:ca44cfeacbe9 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:35:19 -0500
parents 70c0633aeba3
children
files filter_alignment.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/filter_alignment.xml	Tue Oct 30 19:35:40 2018 -0400
+++ b/filter_alignment.xml	Thu Dec 05 07:35:19 2019 -0500
@@ -1,10 +1,11 @@
-<tool id="qiime_filter_alignment" name="Filter sequence alignment" version="@WRAPPER_VERSION@.0">
+<tool id="qiime_filter_alignment" name="Filter sequence alignment" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
     <description> by removing highly variable regions (filter_alignment)</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements"/>
     <command detect_errors="aggressive"><![CDATA[
+@MPLBACKEND@
 filter_alignment.py 
     --input_fasta_file '$input_fasta_file'
     -o output
--- a/macros.xml	Tue Oct 30 19:35:40 2018 -0400
+++ b/macros.xml	Thu Dec 05 07:35:19 2019 -0500
@@ -1,6 +1,8 @@
 <?xml version="1.0" ?>
 <macros>
+    <token name="@PROFILE@">18.01</token>
     <token name="@WRAPPER_VERSION@">1.9.1</token>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement>