Mercurial > repos > iuc > qiime_summarize_taxa_through_plots
comparison summarize_taxa_through_plots.xml @ 7:834ef917138f draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author | iuc |
---|---|
date | Thu, 05 Dec 2019 07:54:07 -0500 |
parents | 62eb36dff24d |
children |
comparison
equal
deleted
inserted
replaced
6:b3251bd7fb69 | 7:834ef917138f |
---|---|
1 <tool id="qiime_summarize_taxa_through_plots" name="Perform taxonomy summaries and plots" version="@WRAPPER_VERSION@.0"> | 1 <tool id="qiime_summarize_taxa_through_plots" name="Perform taxonomy summaries and plots" version="@WRAPPER_VERSION@.0" profile="@PROFILE@"> |
2 <description>(summarize_taxa_through_plots)</description> | 2 <description>(summarize_taxa_through_plots)</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
7 <version_command>summarize_taxa_through_plots.py --version</version_command> | 7 <version_command>summarize_taxa_through_plots.py --version</version_command> |
8 <command detect_errors="aggressive"><![CDATA[ | 8 <command detect_errors="aggressive"><![CDATA[ |
9 ## set matplotlib backend | 9 @MPLBACKEND@ |
10 export MPLBACKEND="Agg" && | |
11 echo "backend:agg" > matplotlibrc && | |
12 | |
13 summarize_taxa_through_plots.py | 10 summarize_taxa_through_plots.py |
14 --otu_table_fp '$otu_table_fp' | 11 --otu_table_fp '$otu_table_fp' |
15 --output_dir output | 12 --output_dir output |
16 #if $parameter_fp | 13 #if $parameter_fp |
17 --parameter_fp '$parameter_fp' | 14 --parameter_fp '$parameter_fp' |