Mercurial > repos > iuc > qiime_summarize_taxa_through_plots

comparison summarize_taxa_through_plots.xml @ 7:834ef917138f draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:54:07 -0500
parents 62eb36dff24d
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6:b3251bd7fb69 7:834ef917138f
1 <tool id="qiime_summarize_taxa_through_plots" name="Perform taxonomy summaries and plots" version="@WRAPPER_VERSION@.0"> 1 <tool id="qiime_summarize_taxa_through_plots" name="Perform taxonomy summaries and plots" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
2 <description>(summarize_taxa_through_plots)</description> 2 <description>(summarize_taxa_through_plots)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <version_command>summarize_taxa_through_plots.py --version</version_command> 7 <version_command>summarize_taxa_through_plots.py --version</version_command>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 ## set matplotlib backend 9 @MPLBACKEND@
10 export MPLBACKEND="Agg" &&
11 echo "backend:agg" > matplotlibrc &&
12
13 summarize_taxa_through_plots.py 10 summarize_taxa_through_plots.py
14 --otu_table_fp '$otu_table_fp' 11 --otu_table_fp '$otu_table_fp'
15 --output_dir output 12 --output_dir output
16 #if $parameter_fp 13 #if $parameter_fp
17 --parameter_fp '$parameter_fp' 14 --parameter_fp '$parameter_fp'