Mercurial > repos > iuc > qiime_summarize_taxa_through_plots
changeset 7:834ef917138f draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2019 07:54:07 -0500 |
| parents | b3251bd7fb69 |
| children | |
| files | macros.xml summarize_taxa_through_plots.xml |
| diffstat | 2 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Tue Oct 30 19:42:08 2018 -0400 +++ b/macros.xml Thu Dec 05 07:54:07 2019 -0500 @@ -1,6 +1,8 @@ <?xml version="1.0" ?> <macros> + <token name="@PROFILE@">18.01</token> <token name="@WRAPPER_VERSION@">1.9.1</token> + <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token> <xml name="requirements"> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement>
--- a/summarize_taxa_through_plots.xml Tue Oct 30 19:42:08 2018 -0400 +++ b/summarize_taxa_through_plots.xml Thu Dec 05 07:54:07 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="qiime_summarize_taxa_through_plots" name="Perform taxonomy summaries and plots" version="@WRAPPER_VERSION@.0"> +<tool id="qiime_summarize_taxa_through_plots" name="Perform taxonomy summaries and plots" version="@WRAPPER_VERSION@.0" profile="@PROFILE@"> <description>(summarize_taxa_through_plots)</description> <macros> <import>macros.xml</import> @@ -6,10 +6,7 @@ <expand macro="requirements"/> <version_command>summarize_taxa_through_plots.py --version</version_command> <command detect_errors="aggressive"><![CDATA[ -## set matplotlib backend -export MPLBACKEND="Agg" && -echo "backend:agg" > matplotlibrc && - +@MPLBACKEND@ summarize_taxa_through_plots.py --otu_table_fp '$otu_table_fp' --output_dir output