Mercurial > repos > iuc > qualimap_counts
comparison test-data/rnaseq_qc_results_default.txt @ 0:e020be4f281b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"
| author | iuc |
|---|---|
| date | Thu, 10 Oct 2019 17:40:46 -0400 |
| parents | |
| children | d696cf0a9622 |
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| -1:000000000000 | 0:e020be4f281b |
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| 1 RNA-Seq QC report | |
| 2 ----------------------------------- | |
| 3 | |
| 4 >>>>>>> Input | |
| 5 | |
| 6 bam file = /tmp/tmp_CFvEQ/files/000/dataset_1.dat | |
| 7 gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat | |
| 8 counting algorithm = uniquely-mapped-reads | |
| 9 protocol = non-strand-specific | |
| 10 | |
| 11 | |
| 12 >>>>>>> Reads alignment | |
| 13 | |
| 14 reads aligned = 100 | |
| 15 total alignments = 101 | |
| 16 secondary alignments = 1 | |
| 17 non-unique alignments = 2 | |
| 18 aligned to genes = 54 | |
| 19 ambiguous alignments = 0 | |
| 20 no feature assigned = 45 | |
| 21 not aligned = 0 | |
| 22 SSP estimation (fwd/rev) = 0.59 / 0.41 | |
| 23 | |
| 24 | |
| 25 >>>>>>> Reads genomic origin | |
| 26 | |
| 27 exonic = 54 (54.55%) | |
| 28 intronic = 0 (0%) | |
| 29 intergenic = 45 (45.45%) | |
| 30 overlapping exon = 0 (0%) | |
| 31 | |
| 32 | |
| 33 >>>>>>> Transcript coverage profile | |
| 34 | |
| 35 5' bias = NaN | |
| 36 3' bias = NaN | |
| 37 5'-3' bias = NaN | |
| 38 | |
| 39 | |
| 40 >>>>>>> Junction analysis | |
| 41 | |
| 42 reads at junctions = 52 | |
| 43 | |
| 44 CTTT : 48.08% | |
| 45 CCAC : 48.08% | |
| 46 GCAC : 1.92% | |
| 47 CTAC : 1.92% |