diff test-data/rnaseq_qc_results_default.txt @ 0:e020be4f281b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnaseq_qc_results_default.txt	Thu Oct 10 17:40:46 2019 -0400
@@ -0,0 +1,47 @@
+RNA-Seq QC report
+-----------------------------------
+
+>>>>>>> Input
+
+    bam file = /tmp/tmp_CFvEQ/files/000/dataset_1.dat
+    gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat
+    counting algorithm = uniquely-mapped-reads
+    protocol = non-strand-specific
+
+
+>>>>>>> Reads alignment
+
+    reads aligned  = 100
+    total alignments = 101
+    secondary alignments = 1
+    non-unique alignments = 2
+    aligned to genes  = 54
+    ambiguous alignments = 0
+    no feature assigned = 45
+    not aligned = 0
+    SSP estimation (fwd/rev) = 0.59 / 0.41
+
+
+>>>>>>> Reads genomic origin
+
+    exonic =  54 (54.55%)
+    intronic = 0 (0%)
+    intergenic = 45 (45.45%)
+    overlapping exon = 0 (0%)
+
+
+>>>>>>> Transcript coverage profile
+
+    5' bias = NaN
+    3' bias = NaN
+    5'-3' bias = NaN
+
+
+>>>>>>> Junction analysis
+
+    reads at junctions = 52
+
+    CTTT : 48.08%
+    CCAC : 48.08%
+    GCAC : 1.92%
+    CTAC : 1.92%